I’m trying to back up the movie Alien SE, the one with the director’s cut. I used dvd decryter to extract the main movie from the disc, I did have anydvd running. Then used ifo edit to strip away the unused audio. Finally, used dvd2one to burn it. The quality was excellent, but while playing the final result, the movie would start repeating chapters.
Somewhere along the line I ended up with 41 chapters, from a movie that only has about 21 chapters. Any suggestions?

Im not too familiar with those programs, but have you tried Nero or Alcohol120 and back it up as an image file and burning that. It mught be easier / less work / less complicated for ya?